Scaffold Ga0316217_10004087

Overview

Basic Information

• Taxon OID: 3300031813
• Scaffold ID: Ga0316217_10004087
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16057
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316217_1000408716	F021233	GGA	MVSSNSSYSGGFKRGLDSLTEPVLGETHDNKFNDLHNFVVRAFTWESKPEELVALEAIEKMVEEFMAEYLSPAEVIIARFNSDIGMSDSEADRLFLNLQSTIVAIEEEVTRRYLKAQFSYYIWDDKYWEAYRKPVSGTQNDLQARARMETRDDRYFYFVQYAAWRQISDKVTSLKATQKYIQNQIYRRS
Ga0316217_1000408717	F027396	AGG	MAERKTRKQEVIRGKMTWQVLERILNNYYEWKAVYATTGNPDLQLLNGITVNIHDILNGIEKLPPRQKQAVVLSCLENIKEVEVAKIMGFTKWSSQVGMYKRKALKTLCDTIWVDCVD