Scaffold Ga0316217_10000992

Overview

Basic Information

• Taxon OID: 3300031813
• Scaffold ID: Ga0316217_10000992
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38495
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (48.28%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003261	Metagenome / Metatranscriptome	497	Y
F017820	Metagenome	238	Y
F067015	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316217_1000099214	F003261	GAG	MSSTWVKLPTPRVGRHSDFPLARRHLQTEAVLAFHIVRSKIHPVQPRQLKTLDDLMAQAGHYAEFCMRNSGKMAPTLFLIGADGPLMFVPTSLTDESEKDAFATTARLMCIANAATVCVMAMEAWMKMAKPGEKLDMTEPPSESFDRQEVVVLMGEDRTGQKQKFLPIIRSGNGKFFGFNESDMPQLDSMEGRFAGILPPNVATDEHRTLAKAMLKVKGVNVTKPGTTVRLTPPRR
Ga0316217_100009927	F067015	N/A	MGNDDSSEAVQTRFTALAGGYKTKLPRKLALLLPFKTQIEGLLARRASYDDIRILLEDVKIVVSKNTVYRFCRQVIGQKPVRQRNAGAKEILPLKMSPVQSPPPESIQASLREQRKLIPGPWSRRKPGPRIADSKNL
Ga0316217_100009929	F017820	N/A	VNEEKNSFDEAVSEWRLKNGIRDDDSVLQMLELLKIFFQNVKIEIPPDTDSIQLITVRVSLQTLTQLTKDFSKEARELKQEIRSVPQITQQLSAGRAVAFLCVAIASLLAGILIGKFLL