Scaffold Ga0316217_10000281

Overview

Basic Information

• Taxon OID: 3300031813
• Scaffold ID: Ga0316217_10000281
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74739
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 64 (88.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020296	Metagenome	224	Y
F021909	Metagenome / Metatranscriptome	216	N
F028681	Metagenome / Metatranscriptome	190	Y
F038946	Metagenome	164	Y
F039909	Metagenome	162	N
F046773	Metagenome	150	Y
F061455	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316217_1000028112	F020296	GGA	VRNRSIGILLAALLSAGCACFAQRTIDTVAPLRANQFTDQVYVGFDHTRTDYALATSDGNEVATTNGVDVEYDMRRKEHLAYIATVRYGKGTPFGQSLITGAAGASYLLHYRRYEPYVHAMGGYTRLASQHAAGGMYLSNVNSGFMMLFGAGLDVKLSERWGMRAISLEDIYLPFGSARSTYWSVGSGVLYHFGRAR
Ga0316217_1000028124	F028681	AGGAG	MSSSAGIGGAFGLLLPEFPQVAAIYGDLKIVVNKAIEEESTQDPGDMEGAPEVLELRDRLIQAFAEDGIIIPVSAALLWTGSEADRLARCATPADEWVLGYGVFTNPWDYPPMDESFRKSASFHSWAWIA
Ga0316217_1000028151	F046773	AGGA	MPNIIQFLIPAALVLACLLICHAFIAFRGFLITGAVLGAVGGDSWAFHRYGFYGMPTIIYLLVPAAVILTCVLIYLASTNFRGFLVLGSTLAAIAAAGWLLHTLAPVVGILLVIWFILRGFCNSTGGGSLFKAFVVHSGVPDISVGEAYMASEADLI
Ga0316217_1000028168	F039909	GAG	MALVGGRQYAAFLRIRKVEGRLYVSEHNQWLWSPLCGSEPRILTDWELEDLASPLDVCRTLLFSAQDAMNELLRQIEGVQEPLTPTWTEPGRRYADEIISELFQIKSKS
Ga0316217_1000028169	F061455	GAGG	MESKNTPIEMPLTIITQEEGVALARKAFKRVEVRDFKTFLLDLITDPIRKYSYKPDANPDDPGRRRLHPILVSGLVCFGLMLAVFLYFSYWR
Ga0316217_1000028171	F021909	GGAG	MFLTSWLFVIGSLLLLARLASHARLFTQSFVHAVKPSHQTGGSSYVPRASSGRYQVQIDFGKAAMADGAMQFHYQWKLIQSQFGLRITKEDKEVLDRKIQAHCKHAVEDPTVAAGDHRLLQWFN
Ga0316217_100002818	F038946	GGA	MGKNKSSNMFQPGPHGGCEALLYEFREPPLQSDDEDDLPPASGQPHPRTVLIAAKTVDEALFYLRFHAHNFSVHNVRCLGVILMVSGSPAD