Scaffold Ga0316217_10000111

Overview

Basic Information

• Taxon OID: 3300031813
• Scaffold ID: Ga0316217_10000111
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 124449
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 105 (89.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020296	Metagenome	224	Y
F028681	Metagenome / Metatranscriptome	190	Y
F034796	Metagenome	173	Y
F038946	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316217_10000111106	F034796	AGG	MSPLFVSASVLCSPRTNPEQGARRRTGILLNPSYATPPALAAVGTSTMFRVVSYAGPDGRRHVHAEPLIPAARNSSWQSGGNRLHSDDPAFADFTGGTDPIPLYDVQAA
Ga0316217_1000011134	F038946	GGA	MGKNKKESRKRFQPGPHGGCEALLYEFREPPLQSDDEDDLPPASGQLHPRTVLIAAETFEEALQYLRFHAHAFNVHNVKCLGVILMVSGSPAD
Ga0316217_1000011138	F020296	GGA	VRNRSTLILLAAILLSGCACFAQQSVDTVAPLRANRFTDEVYVGFDHVRTDYALATPDGDDLATTNGLDVEYDMRRKEHIAYIATVRYGGGSPFNQSLITGAAGASYLFHYSRYEPYVHAMGGYTRLASQHAAGGMYLSNVNSGFMMLFGAGLDVNVTERWGVRAISLEDMYLPFGSSRSTYWSVGAGVLYHFGRAK
Ga0316217_1000011153	F028681	AGGAG	MSSSAGIGGAFGLLLPEFPQVAAIYGDLKLLIDKAVEEESAKDPGELESAPEVLEVRDRLIKAFAEDGIIVPASAALLWTGSEADRLARCATPADEWILGYGVFTNPWDYPPMDESFRENSSFHSWAWME