Scaffold Ga0308411_10055285

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10055285
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1763
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y
F080999	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100552851	F004024	N/A	MMPSERDYLRQPSSLTDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308411_100552853	F002229	GGAGG	MVTLLTLDGVEEIDYVPSDAEIRASLDDAGLYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWVMDGLGERGYWSPALSAVVADVCAVYGGCIED
Ga0308411_100552854	F008135	AGGAGG	MRAMIDPRTERVLTEAGASIARVLDARQRHAVALALEVCSYIVAALPPDNDVTFGDMVRLIKWFAGGFKDAEGDDACD
Ga0308411_100552855	F080999	GGAGG	MPVTSGLVLRGMIAAYREFVSRKDGKMYRIVTVYGDLVAGEDVLCQVDGYDVFVDSPDYSRGEMVSFPARL