NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10041339

Scaffold Ga0308411_10041339


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10041339 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2205
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026891Metagenome / Metatranscriptome196Y
F040649Metagenome / Metatranscriptome161Y
F069555Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100413391F026891GGAGGMTIIASDAIEIEANRDDGRVWWAQNGAKRTRLSLYAAQGVHIERVDTEVYVARDAVPVWTGEQWHREAAVYLYPAEKDELYAVWLNTHCGFAVVPKDAVLWEASSFGGPKNSESKIAVLKAGCYVEEYTYKRATPSNWYAITLDGAVRRLGTGSNIVALALRGDKDAKRLAEFKGWLSELTGELEVQDET
Ga0308411_100413392F069555GGAGGMRKAIKDQAVKLAAAIRETGKREIEYRIGSFGLELADGSRPPADMLQRIQQLSIRSETVCQWAEENGARRDCKLVYSARDEAHYLAEYRWLDNNGLRCDVVYYQAPKRLEPQIQSLKQAMAQGLGVFSAASANGCDSGGGSCSPCAPAASFAEGRDA
Ga0308411_100413393F040649AGGAGGMHKLNIDHPAQLFAQLRAITNACDPNEYAPLEYYLQGAEIELPDGSPAAGDWLLAIKTVELADALVQHTEGDGALRRSFRLVYLAPIETYFWGGYYWRDPVGFTILVRWHRIPKDYNAQLDALRKSRQGRCGDA
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