Scaffold Ga0308411

Basic Information
Taxon OID	3300031812 Open in IMG/M
Scaffold ID	Ga0308411_10034778 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2518
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2518

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F076715	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100347782	F004307	AGGA	MFKELISNGNHSERPELNGAYVGRFLGVKERQRPTFETRHNPEPTLEDVFVFEFEVEDDDGNPLRVSKWVRKPARLTHPGKSGKVTNLYRVLSALYGVSVMTDAQLERAEEFIQEAIGREYQLTLETKPSGWCEIVHIAPVRARRKEKPVDEVPF
Ga0308411_100347783	F008499	AGGAG	LTKCRSRTEPRWKRKEREAVKALQATFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKHMLTKPTLDALLQTIDRAARFDRIPLFVLVFGDDVPQRTENGARVDREWVMMPRRVLDELVGKERKDE
Ga0308411_100347784	F018115	AGGAG	MSDEKERYIRWYAHLPAHVPLDRHATRALLRRALANREELAEYLLKQECSPALLGEFFFRHWNDAISDAPSSAALRLASAVMRALERIEDERDRRAAEWWFRLGLVPSVRVLRQLCARINDAR
Ga0308411_100347785	F005028	GAGG	MRDDDLRAAMSFFAARLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRATYIRYFLRYHVAHTDPETGGEDVVLAVADLHTAAKRLRQPYRDLAAVCLRWGYVHETVVRLLAKTLERKAKNVVED
Ga0308411_100347786	F076715	AGGA	MWWKIEEVPHQELEEWASAVYSCERKAKRDPATRAAGVFVMFVREGETRPEYAPGDKAPEGAYLVGRWTLKPP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308411_10034778

Overview

Ecosystem & Geography

Associated Families

Sequences