Scaffold Ga0308411

Basic Information
Taxon OID	3300031812 Open in IMG/M
Scaffold ID	Ga0308411_10020194 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0308411_10020194 Open in IMG/M

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3717
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3717

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y
F031513	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100201941	F031513	N/A	VYADSGIVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWRGGGQWLDLLRVMGVLLPAVFAYFTWAQVASLQALVAQILALVGDK
Ga0308411_100201943	F004024	AGGA	MPSERDYLRQPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYERIAPVIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308411_100201945	F002229	GAGG	MVTLLTLDGVEDVDYVPSDLEIRASLDDAGLYGMVLNGVTWMRLASGAGWWTVICNRRVTATLAAIGWCWVADGLGARGYWSPALACVPAEVRAMCGDGCVDDDDEED
Ga0308411_100201946	F008135	AGGAGG	MRAMNDSRTERALTEAGAGIARVLDARQRHAVALAIEACWYIVAALPPDGSVTFGDVVRLLRWFARGFNEGVEVDDVDG
Ga0308411_100201947	F002795	GGAGG	MSTGNRLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGESVICTVDGYDVFVDSPDYARGEMVELPARLQFARDSSGRPVVKLYVDEGVR
Ga0308411_100201948	F002372	AGGAG	MPTRREDALWSVVHRRSSHLRALLDTLDDIDVGVTYELDYYPYAIVELLRVREHAPPLVLRSVYVQANRQWEYHSEFTLRVVEAALQLVQEYHADPSLGGAEAWA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308411_10020194

Overview

Ecosystem & Geography

Associated Families

Sequences