Scaffold Ga0308411_10018405

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10018405
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3946
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F031016	Metagenome / Metatranscriptome	183	Y
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100184054	F031016	AGGAGG	MAVITIWEGERRVVCGNEYEFVKYVEFEGAELGSSWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWEGEATHAYIYVFPSMGGVNGAAAMFWRELRKAGLIPPLTVGLDE
Ga0308411_100184055	F002982	GGAGG	VKIQFERHPHAICVVLTDTGECDRIITVARASDAIDALALDIHTAALKPLDALFALPRVVCVEIEQRSGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308411_100184057	F087842	AGG	MALIWIWAGYVAAGDARVYLITFDGERIGGVDERNAQRTFYATADGRVVVHEVRIGRRRGGITYDQSLVYVFSDLAQACAHLAVNPQHIDPTRGEATLPDVDAPTLTPDEWARGVGSY