Scaffold Ga0308411

Basic Information
Taxon OID	3300031812 Open in IMG/M
Scaffold ID	Ga0308411_10016755 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4209
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4209

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100167551	F023603	N/A	YTISLGMLYTTEDFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRIGYMPHLAWRGSETLRRLMRFAPLVVQAELAAPTATIPYSSPIPQAPDFVAIGDPVRAYTATGEVQTSVVNVTAADITLAVALPAGPVRLIVENLRIRISRAYLTF
Ga0308411_100167553	F038584	N/A	MTEEIKQIQKAGEELLATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVADLRSARKLMQRYVQKTTVGANTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDIITDEVLLAYPDIVEFLIWHGAYRLEVFLHNALITLLSSIASTATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWLANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLTLIPAGAAQTAPAIVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLPHAGRPVIVANTQNAINSMA
Ga0308411_100167555	F044249	GGCGG	MTKRDALLALLGASLTIVAKKYILVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYIVFYLALLVGLEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAP
Ga0308411_100167556	F024322	N/A	MSLLRKLRNVRQRRSLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYVFPFSAEERVAFHPPPIFVAHYNEFSQIAARQRDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRVAGVRESLMELWPKMVSVMEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINIKDYELNAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308411_10016755

Overview

Ecosystem & Geography

Associated Families

Sequences