Scaffold Ga0308411_10012593

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10012593
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5068
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N
F054062	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100125932	F054062	N/A	MGKLRELSWKDFCDGLDKDPPDDVQKEAEHVFFDHVFPEALLAFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLIPALKNLGAEPEKATFLEICAFLTTYKS
Ga0308411_100125933	F023603	N/A	MLYTTADFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFAPFVVQAELATPTATIPYPSPIPQVPDFVAVGDPVRAYTTSGDVQTSVVSVTATDITLAVALPAGPVRLIVENLRIRISRAYLTF
Ga0308411_100125935	F038584	N/A	MTEEIKQIQKAGEELLATLHATAAAEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTTVGTNTPREYIGEAFYVTRQLVIEFVQDYLRTETLDILAEITQVRVNPFTGAPAIVGEGQPKPEMPTTPERVTSNYQKIAFSDVITDEVLLAYPDIVDFLIWHGAYRLEVFLHNALVTLLSGIASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWLANAAIVPFPYYWTLVFGALKSTTGEYLQLDRQLQGLTLIPVGAAQTARTVVFNENELEVFFLGDITVNFGRVLDAAFETNVRRLSMDLFYAPLPHTGRPVIVANTQNAINSMAQ
Ga0308411_100125937	F044249	AGGCGG	MTKRDALLALLGASLTIVAKKYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYLIFYVALLVALEQIASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLIKVFRHEPPEKAS
Ga0308411_100125938	F024322	GAG	VWANYLTPPSPVQVDTSVGTLTIQTGLVRSFVREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQRDAFLAVIPDARMGKSEWGEVEHEAFFFAPAQDTEEFEVQLERLAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV