Scaffold Ga0308411_10011742

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10011742
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5289
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F024322	Metagenome / Metatranscriptome	206	N
F044249	Metagenome / Metatranscriptome	154	N
F068874	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100117422	F068874	N/A	VFGRLRRVLRFYERVELPDVPAQAQSLSYGGKTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMKRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRGGLRKALLAALLGCAPLKKAKSVQSVEVAVRREEVVAHETLRLTTLLNDTVYLRNERLVIQYDTIRQMLRIEQVRPVVVLRDSVVKQNIVMQAPAWVAEERVEKRLSWWKRWGQGVFALMLGLSVLGFIGYLWLRALRIG
Ga0308411_100117423	F007033	GAG	MQCRCSQPLWALGIPDCHPVLRPIRRVAFETQLGPSSAPADFDLINSTVYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVRLDGAAPIPIEPGTVQVRLLFPSDTTITKYEFSFDFAQSLMDFELVPVFADAGLLNYVPGIAARIAVVKISPLEVLVHALYARGAGDFYIPISGLASFLELRDNTNTLIPTSFTEFSPGFYRDASLSLSPSGNPYTIRVGSSAPAGAFDYTTAVAQFSV
Ga0308411_100117424	F024322	GAG	VWANYLTPPSPVQVDTSVGTLTIQTGLVRSFAREYDVSTYAFPFSAEERVAFHPPPIFVAHYNEFSQIAARQRDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLERIAGVRESLMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINIKNYELNAV
Ga0308411_100117425	F044249	N/A	KYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYLIFYVALLVALEQIASYLIPPLLSVAIIYEASLALRKAVQLNIIPAELVRQLTKVFRREPPEKAS