Scaffold Ga0308411

Basic Information
Taxon OID	3300031812 Open in IMG/M
Scaffold ID	Ga0308411_10004674 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8982
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8982

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F016100	Metagenome / Metatranscriptome	249	Y
F070748	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100046741	F070748	GGA	LKSFDEQAAYGLPYEHLIAQAALLLLYPQRLDLTLVRLDARAPLDFLLFDGGSPVAALEVKRRSIRSDAYRTTILPQS
Ga0308411_1000467410	F012577	AGGAGG	MLVAITKPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSKTIWRGQIERIEEARDGSITWHALGFGALQRDARISVVRNMTDMKNWKPVGEGIITNSGYDSRGDLWEYESVASSGNIVVQIRTKKAFTISNTTLFFLAYLFDQPQRYYKLENNERIFVHQVTSTGLADGVLVAPVTSIVQTSTYQLIFGTFTGLSTGGNLTAPNSFGWIIGVNAAGNETTAGTTSVSFRAEINDLQFGSIDEEKLTIALNERGGCCTIHLPSASSVSLTKPDANLRDIIENADGTVVRYHRKRFLRDRPRPTIDFRTDSTLVWRFPETTRVVDISKAPNRIYGQYPGYWADYLTATTTIQSLETRRHLTKRFASVGEYDTKAIADTRRNEAAIALDRQIAPLAVELDNTRYELMLRSGETVPNWAADVSDYVIVPGYYYRNAKITARTITRERTTYTVSFSPDDFVTALR
Ga0308411_100046744	F016100	AGGAGG	MVTSVKVERFKEYSELVRVVSRSEKTPATNKDIILPLNYELLVGSHLPEPDWHRLGALIVTLFRSFAVVDVEIWQSDAGLWLADALVDFGDRRRLRRGEGDTPLHAVIELITDIQRY
Ga0308411_100046747	F007404	AGGAG	MDIVEIFQLLAAGHVGLSARDYLWNAIFGAIGATTAYLADKEGVVLLPRYDKEQHSVELGALGRVLTGAGAGVLVGYSGYVPFVAGVVAPTLLPALIDKIAWFVERRRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308411_10004674

Overview

Ecosystem & Geography

Associated Families

Sequences