Scaffold Ga0308411_10004593

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10004593
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9068
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F031016	Metagenome / Metatranscriptome	183	Y
F048124	Metagenome / Metatranscriptome	148	Y
F076715	Metagenome / Metatranscriptome	117	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000459313	F076715	AGGA	MWWKIEEVPHQELEEWASAVYSCERKAKRDPATRAVGVFVMFVREGETRPEYAPGDKAPEGAYLVGRWTLKPPKGWMWYE
Ga0308411_1000459314	F005028	GAGG	MRDADLRAAMRFFAERLRGVELKNAEATDAGLLRWTRHKLRNDAQAVAELMLKVGYRATYIRYFLRYHVPALRESAAVGETYADPSAADVHLGLCWRLDENVLTVYTDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVRLLAKTLERKAKNVVED
Ga0308411_1000459315	F018115	AGGAG	VNKEAERYVRWYAHLPAHVPLDRHAARALLRRALANREELAEYLLKQECVPSLLGEFINRHWNDAISDAPSSAALRLASAVMRALERIEDARDRRAAEWWFRLGLVPSVRVLRQLCVRISDA
Ga0308411_1000459316	F008499	GGA	MKSRSEPRWKRKERDALRALQAVFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGNDPGFAVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKERAGE
Ga0308411_1000459317	F004307	AGGA	MFKELINHNGSRSERPELNGAYTAIFRGVTQRQRPTFETRNAPEPVMEDVFVFDFEIEDDDGQPLRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVAQMTDAQLDRAEEFVENEAIGREYQLTLETKPSGWVEIVHIAPVRARMRKTKEDEVPF
Ga0308411_100045934	F087842	GGAGG	MITIWGGYVAVGDARVYLIVFDGERIGGVDERNAQRTFYQTRDERIVVHEVVFGKRRCGITYDQSLVYVFSSITEACAHLDVPPQHIAQTRGDAALPPVEAPTLTLEEWASGVGTY
Ga0308411_100045935	F002982	GAGG	MKLQFERHPHSICAVLTDAGECDRIINVDRASDAIDALTLDVAPAAYTPLDALFALPRVVLVEIERREGGWRVEVAYWNGALGALAQYETDAATLSEALARCVWALAR
Ga0308411_100045938	F031016	AGGAGG	MTTITIWKGSRRVVLGDDVEFVEYETFVGEELGSVWEEENSRGTQTTFYRTHDGRIVAHVVRWSRWENEATYAYIHVFPALDGVNGAAAMFWRELEQAGLIPPRTVGLDE
Ga0308411_100045939	F048124	AGGAGG	MATISIWRGYRDWDAGSDYEIVSFTGSEIGSVRLTDTEADTQYRVFRDEDDNIIIFFVERRGHYCEAEIYEYPDLEAAAKDYAFILRKAGVI