Scaffold Ga0308411_10004165

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10004165
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9562
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040512	Metagenome / Metatranscriptome	161	N
F044245	Metagenome / Metatranscriptome	154	N
F044342	Metagenome / Metatranscriptome	154	N
F057955	Metagenome / Metatranscriptome	135	N
F068330	Metagenome / Metatranscriptome	124	N
F076974	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000416512	F044245	AGGAG	MIDAMLSIPFRYPLLKKMNRTDAMVMSAILFAFRLHQQTGKYFYLSDAKIMEWTGFKRTAIYEARKRLEAEGWLIVKRGHGGHNMYMITDAVIARLEEADGQSREQQQERLRKAAEKAVSELNVEQTIARILLAFILRTGRMPTKKALRRWIVAARKIKEHGYSAETIADLIRKEDRSLFALLKRIEQGAVKKKKRIEYEVTYDPERGWLAIPHEVEVVEEALEAINERL
Ga0308411_100041652	F057955	N/A	MIDLIEFFTTYGVLGVVALISMSLSLWLLRENQKTLDQCNARVDRLIETHIGFVKNVTEKMDELLRDIGRLIDKAEMTIEELEKTRSWRKDV
Ga0308411_100041653	F040512	GGAG	MFDLLANATVAGLSVVSSRALEQYDWFQRLAPETKRLIAVAIAAFIALAMHMISAIAQNAEPQSVKAAFSTALAIVIQQVYHALAKEDAQ
Ga0308411_100041654	F076974	AGG	MDHVKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESVLITDGKLKVTFCVPLFGITERLLSLKRDRLAESQSPEQLRMPL
Ga0308411_100041655	F068330	GGA	MKMNDKLINDKLMKKLSQLAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAGLSMIVATGMVVVLVAHGVMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSAYIVSMASRNPVSGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFVAIKSNIQHQIERRQKGGRYDYFDLIVWAMFGVIVSVYLILINSFVVRYTAGINDSGALLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETTPKSSARLDEQFATNGVANRQGVKM
Ga0308411_100041658	F044342	AGG	MLMKEKKMNDPVIPVTMHLPKSVVERFKRKAVELIPEEKEEAPSLLLTLFINYMSSDEYWCLFVPDLTREDYKKWQEMANQVYDSIYETVKYHGAGMFPGEIADLAQAVIAARRMTPDDLIKLIIISARYNQVMWKRNDSNKDSPAPLQ