Scaffold Ga0308411_10003004

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10003004
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11341
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F007172	Metagenome / Metatranscriptome	356	Y
F008135	Metagenome / Metatranscriptome	338	Y
F012676	Metagenome / Metatranscriptome	278	Y
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000300410	F002372	AGGAG	MPTRREDALWQIVHRRSSHLRALLDTLDDIDVGVTYELDYYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFTLRVVEAALDLVEEYRADPSLGGADGV
Ga0308411_1000300411	F002795	GGAGG	MATDNRLVLRGMVAAYREFTSRKNGKLFRVVTVFGDLVVGEAVLCSVDGYDVFVDSPDYARGEVVAFPARLQFARDGSGRPVIKLYVDEGVR
Ga0308411_1000300412	F008135	AGGAGG	MRAMNDPRTERVLTEAGAGIARALDDRQRRAVALAIEVCWYIVAALLPDGSVTFGDVVRLLRWFVTGFREADDGDG
Ga0308411_1000300413	F002229	GGAGG	MVTLLTFDGVEDVDYAPSDAEIRASLDDSGLYGMVLGGVTWMRLASGSGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPAEVRSMCGDSCVDDEDEED
Ga0308411_1000300415	F004024	AGGAGG	MHSERDYLRQPSLGDDDMMFLDARATLAAALSRAVVGYSDGRVRALAWLSIATPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRDR
Ga0308411_1000300416	F002978	GAGG	VGVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDADDPDSVSLARRAIATLRAAGADCSALPHPLPGTTPPGA
Ga0308411_1000300417	F000642	GAGG	VQEISIALAICAVGAAIWYMRRREAGAGRVTGWLLLYDDVGGWRALPAAYGDSGIVADGVTYPASLPALRVGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWIDFLRVAGVVLPAMFAYFTWAQVSALQSLVAQILALVGER
Ga0308411_1000300419	F000855	AGGAG	MDWLEDFWSKIVGWWDHASANVYNGIVSFVNSLVEIWNGWMDSLLHPAQTMPSIPALRWIVDWLGGIVDYTRLMYMLVDYVAYAGIVRQALLAQLAIVTVGLAFRAWLVIRRVVLVS
Ga0308411_100030043	F007172	AGGAGG	MNTLERRTFAAALRAAKQDAYCRAVGGFVIARLSDGTIDWFPAGQTPHRGGEPDRNAVILGKWRWNYRRWSRVA
Ga0308411_100030044	F012676	AGGAGG	MTSIKLAARWDGSPMSLTNPDTTWVRLLETRGIAYAAHLSEPAGWRLVVCDERRFTRALHALRKYGVYGICEWTYDIHP
Ga0308411_100030049	F015735	N/A	MVVYHHWSVEWHPRDVDPPGGLPRVVCIARRAVSDPFAGPGPFPADVDRALRFWNLVVSGGATDHGAGYEVVWRLSVVADDADGDAPPDGAWSDDPVYRARRRLLRWIMRSQCSIPALADHFAVEHFWASPAYFGLLEG