Scaffold Ga0308411_10002945

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10002945
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11440
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F005302	Metagenome / Metatranscriptome	405	Y
F007404	Metagenome / Metatranscriptome	351	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F072382	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000294514	F005302	AGGAGG	MSHSGVLAGLYAGNFAVEISTDTTTWTAVSNATVKIDDVELNRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEASNSAANTVFDRFQSATPTLAVRWSPRGLVSQARAYATSNDGGAATGLGVITNVTLSTLDPSDAEPYVAMVTVRTPSLRQYTLGNSPTDLS
Ga0308411_1000294515	F002970	GGAG	MSYSAVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPVLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLVRAPSV
Ga0308411_100029454	F072382	AGGAGG	MKTVYHTKDVYFPPFSIKIEPEQGTWFADVYVRYTNAPNDKYSAYIGANDFLAGTPIPARYRRDLAKAIESLVFDYGLVDLVIYPTREGWGVRITLCPELENQYLFGTGETPADAIRNSNYPPPLWNV
Ga0308411_100029455	F014738	GGAGG	MKLDILLLVSAFALAFVHPDAAQVAATAVLLLLVTRIERGRRARKKKSAPVAH
Ga0308411_100029456	F007404	AGGAG	MDIIEIFQLLAAGHVGLTATDYLWNAVFGAIGAATAYLADNEGEVILPRYDAEQHSVELGALGRVLTGAGAGVLVGYSGYVPFVAGVVAPTLLPALIDKIAGFVERRRK
Ga0308411_100029459	F012577	AGGAGG	MLVAIAEPHQQFPVPLTVADYEFSTFDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGGITWHALGFGALQREARISVVQNMTDAKKWKPVNPGFMPNSGYDSRPDLWDYEFVPVGGFIYIRIRTKRTFTISNTTLFFVAYLYDQPERYATITSSERIYVGVFLTGLASGVWVAPVTAIPQPNAYTLTLGAFTSIDNEGVVTASTCYGWVVGVRASGNETTVGATSVAFLVRINDPASGGINAGSLSTALIARGGCCDIYLPPQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPLPTIDFRTDSTLVWRFPETTRVVDISKAPSRIFTQHRGYWTDHLTATTTIQSLESRRQLARRVAGVGEYGSKTTADARRDEAAIAMDRQIAPITVELDNSRYELMTREGVAVPNWAADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR