Scaffold Ga0308411_10002590

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10002590
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12197
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025421	Metagenome / Metatranscriptome	201	Y
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F059420	Metagenome	134	Y
F059686	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100025901	F059686	N/A	TESWAFIGRAVQANALTSSLPTRIVTPVLSRHASWFVDSVGTAHGTTQIPGTVIEAELSINTNRHLKMFEGSQPLDWGEGRREAQLSITAEFNSTAKAWVDALLTDRVARNIRVNFVETANTRELRIDFVGLIAEPIELFGDRDGNMIVELTFKALVAGPLNNWLQIRTINGVTTLP
Ga0308411_1000259010	F026171	GGAGG	MNRSLRKLREAVRAARLADMPASKVLKALADMPEARAFRLTPDVLRRMLLESLPEQYATFLFDQAGYRVEMSLADLAYFAKHDEILVELVVSIILCLDKE
Ga0308411_1000259012	F026459	AGGAGG	MNSQKVQMLRSINQIESTIRPPVNSLSMFIAALTAMGSGETVQRALYRVERRAPEDVIKDAEQLIDVLYEIGEGVIAMKLQRRLAELREGQSSDAIAGLWELVDMLPNDAYMSFGFAVECAQVRCGEHPNPQELLLDMDFDREGFRFGQAWQFWGEHAPEAMKVARAAFIAALLHAAGLGDEPEYPEPLAD
Ga0308411_1000259017	F029920	N/A	MISMSDLERTFREERPLKGFIAPGLALSYQPRAYLAIGRIERQPDADDIALVIELAREAFIFLARKPQREVISSNGVTWHLARWPLQRESVADHLQLRERRNR
Ga0308411_100025902	F025421	N/A	MIDLTKVRRIDRSAPGSFMEYARLQAIITEGDLMAIARALESYGVDTSQLSFNELVDVVKHIAGEPAPLPATSATE
Ga0308411_100025905	F059420	GGAGG	MEIELFRGSSTLTTLHYRNAPGQYSWVLRDFQGDLMDEVEVLTRDAVGGRTLIAGWQGRARRIVIVLDVQGTSMPNLHAAIQELESHVRWRRNEPPVLVLRVRAQATSPWSVQSVILEQMNAQFEDDQYRATVTMRFACRSVYWRELIGTVSASNNTLTGNAFVVDLSTMTFTPITGISEAITNIDYRPASNEWIIFTTTQVWRAPATGGAAALIGLVTGSTGLRGCVAHDGNILAVALGANQLVRFTYPSSAPTVLGSFNGAPFRVRRFGDQYASVGEFSQYQTTTGLAGMVITNVNGVITNTFSPFPSSTIFPGGGRIRDVLLRDNIGVAIAHRAASPSQSWVVVWSSQVAPYYVAEGASTWGPLEIDQSSAIDDVTICADSWIHAGRTFNTLCRLRNLGGIVPYAYPMVPVGGVQDGCAVERFTFATSEPRKAFRLGDDGTTMPLFTASANSVAVRRVNNLMCIGYAATANVWTPLTVDVSTIANTGATAEIVPRLAGLALPVFSCYSKVDTEILGEVIDPQVQADNYEPKYHGGGTVTPLPGTRYERMFRGSMNEAINRYWFAVGGSVSSNSVTLNRYKHDWR
Ga0308411_100025906	F028964	GAGG	MEVAECELEISVRAPSYELSAYGDVLMAMLPDRREYYFVTAIERRNTYYVFRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAKGFPLVWWFECGRWCAAKDATENYGVEPSIALVFAHGLPRNGLFRPRWASSIKYEAWVYDRSQPTAGVALGYGHGQDRDVARARAARGLFNGWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGEHQRCAGIAHVVSERYVITGGQVSSAEVGVVQI