Scaffold Ga0308411_10002097

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10002097
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13570
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F015735	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_100020971	F002372	AGGGGG	MPTRREDRLWSVAHQRSVHLRALLDTLDGIDVGVTYELDYYPYAVVELLRVREDAPPLVLRSIYISANRQWEYHSEYTLRVVEAALRLVEEYRSDPSLGGAEAVWA
Ga0308411_1000209710	F002978	AGG	VSDLRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDADDPDSVALARRAVATLRAAGADCSALPSPLPGSPPGA
Ga0308411_1000209711	F004024	AGGA	MPSERDYLRQLSSLTDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYMRRRDERRSER
Ga0308411_1000209713	F002229	GGAGG	MVTLLTLDGVEEIDYVPSDAEIRASLDDAGLYGMVLHGVTWMRLVSGVGWWTVIGGRRITATLAAIGWCWAADGPGERGYWSAALSAVVGDVCAMYGGCVED
Ga0308411_1000209714	F002795	AGGAGG	MPVTTGLVLHGLIAAYREFISRKDGKKYRVVTVYGDLVAGEDVLCQIDGYDVFVDSPGYARGEMVSFPARLQFARDGSGKPIVRLYVYEGVR
Ga0308411_1000209715	F002372	AGGGGG	MPTRREDRLWSVAHQRSVHLRALLDTLDGIDVGVTYELDYYPYAVVELLRVREDAPPLVLRSVYISANRQWEYHSEYTLRVVEAALRLVEEYRSDPSLGGAEAVWA
Ga0308411_1000209716	F015735	AGGCGG	MVWHYWSVEWHPRHDPPADLPRVVCIARRAVSDPFSGPGPFPGDIDRALCYWNRIASGGACDHGAGYEVAWRVSVVADDPDGDAPDGAWSDDPVCRVRRRLLRWIMRSQCPLFADFFAVEHFRDHPEYFGLEPGA
Ga0308411_100020972	F015735	AGGCGG	VIVYHHWSVEWHPRHDPPADLPRVVCIARRAVSDPFSGPGPFPGDIDRALCYWNRIASGGACDHGAGYEVAWRVSVVADDPDGDAPDGAWSDDPVCRVRRRLLRWIMRSQCPLFADFFAVEHFRDHPEYFGLEPGA
Ga0308411_1000209722	F001381	GAG	MQYVIATLYVLVWLALAALAALWLPIWALPVALVQLAVAYVMLRSWLTAAAGGDDGA
Ga0308411_100020977	F000855	GAGG	MDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDVWNGWMDSLLHPAQAMPSIPALRFIVDWLSNLVDYTRLMYMLVDYVAYASVAQQALLAQLAIVAVGLGFRAWLVIRRIVLVS