Scaffold Ga0308411_10001802

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10001802
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14602
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F010840	Metagenome / Metatranscriptome	298	Y
F018115	Metagenome / Metatranscriptome	236	Y
F025895	Metagenome / Metatranscriptome	199	Y
F043176	Metagenome / Metatranscriptome	156	Y
F044842	Metagenome / Metatranscriptome	153	Y
F075805	Metagenome / Metatranscriptome	118	Y
F076715	Metagenome / Metatranscriptome	117	N
F087842	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000180214	F075805	AGGAGG	MRIRVWHGWRAVHGGKDISRWEWVEFDGELLGTLVVEIDEDRTDERAFYRTNDGRIVVAEHRYGKWEAGGVDYGVVSVYADLDDAARRGRRDDLVRVGAYDAPTRELDEWLSQYEEEE
Ga0308411_1000180215	F002982	GAGG	MKIAFERTPTAICAVLYEPGECDRIITVARPSDAIDALALDIHTAAFMPLDALFSLPRVVCVEIERREGGWRVEVAYWNKGLGTLAQYETEAATLSEALARCVWALAR
Ga0308411_1000180216	F087842	AGAAGG	MITIWGGYVATDEVRVYLITFDGERIGGVDERNAQKTFYSTADGRVVVHEVRIGRRRGGRTYDQALVYVFDDLAQACMHLTVNPQHIAQTRGDAALPPVEAPTLTLEEWARGVGSY
Ga0308411_1000180218	F007976	AGGA	MPSTELANFLRVALDVQATPFPGIHVADGVMAATDGVMLVAKKFDDKVFLRGEGAISPKAARVLEGLAGATWIGSIAVLGNRVTVTAQTTRYDEKAGGEVAGEYCEVKLPEFYCPRAPVARMLGVLTDESRGWQQIVENPRIKNVKEWSVKEFVALMSNPREGYELFRLKDTDDAHWYSVAQLRRGLRLFGARARLSVRRNAKGWLAFEDAYGHTFAITPFIKQN
Ga0308411_1000180220	F043176	AGGAGG	MQTYRIWEGERTFLPGDDTGKYTVIEIVAEELGWFEDVNPDGFSGTAYYVYRTESGEIIINVVNENYGIGEPNRAVIFRFRSLEEAAQSEQRYALSELRLI
Ga0308411_1000180221	F006418	AGGAG	MPKRRSAPKPQPAREIVIAEGEDYRIIFDRETKDYAVEYRGEPVGWRASESEARRLIEALRYEDAKRA
Ga0308411_1000180222	F010840	AGGAG	MNLPFSQPLDKVTYGALAAATVIILTWALREFVGIDLPAEVQSALAVIFGYVVSYHISLNETEAEAIARKYYKYK
Ga0308411_1000180226	F005631	GGAG	MRVSVSVDLDNALRKLLPRAARIEAALDAGAAAAHSVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKERGR
Ga0308411_100018023	F018115	AGGAG	MSDEAERFVRWYAHLPPDAPLDRHAARALLRRALADREALAEFLLEQCTPALLGEFIHRHRNDALSDAPESAALRLASAVMRALGRIEDTRDRRAAEWWFRLGLVPSTRVLRRLCEGINDAR
Ga0308411_100018024	F005028	GAGG	MRDDDLRAAMRFFAERLRGVDGDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDEDVLTVYTDLHSAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKV
Ga0308411_100018025	F076715	AGGA	MWWKIEPIPHQELEDWERALLRCENRAKRDPATRAAGVFVVFVREGETRPEYAPGDKVPEGAYPVGKWTLKKKGWMWYD
Ga0308411_100018026	F025895	AGGA	MTDLIAWIIAGGVIFALVNSNAADGLLSALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVEVWQRGGLFAPLPDALEGAAVVLAKVGWTFAASFAFEFLAILCAVTALLLAANVRAPGGGGGGR
Ga0308411_100018028	F044842	AGGAGG	VEEIELWCGVRGNTFRSTQCVRFVGEFLAVVDVARADDWVERCVLYRSEDGRVVVHQLRLSLLDDGIDVAEVYILPALDAGEGERGG