Scaffold Ga0308411_10001531

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10001531
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15765
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F010840	Metagenome / Metatranscriptome	298	Y
F016404	Metagenome / Metatranscriptome	247	N
F018115	Metagenome / Metatranscriptome	236	Y
F032180	Metagenome / Metatranscriptome	180	Y
F051735	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000153111	F007976	AGGA	MPSSELAHFLSVAIDIQAPPFAGVHVADGVVAATDGVMLVTKTFSGEFLRGEGAISPKAARVLEALAEGTWIGSIEVDGNRVTATARSTRYEEKAGGEVAGEYCEVNLPDFYCPRVPIKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVALVDDPRDGGELFRSKADNDTHWYSVAQLRKGLRLFGRNSRLSVRRSNNGWLSFSDQWGYTFAVTPFVKRD
Ga0308411_1000153112	F002982	AGGAG	VKLQFERHPHAICVVLTDAGECDRIITVARPSDAFDALALDIHTAAHKPLDALFALPRVVLVEIERRAGNWRVEVAYWNGALGTLAQYEEDAATLSEALARCVWALAR
Ga0308411_1000153119	F032180	AGGA	MWWKIEEIPHQELEEWERAVGRFERAAKRDVAVRAAGAFVIYDLNGVLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308411_1000153120	F005028	GAGG	MRDDDLRAAMSFFAARLRGVDVTEAGLRRWTRHKLRNDTQAVAELMLTVGYRPTYIRYFLRYHVPTLRESAVVGETYADPSAADAYLGLCWRLDENVLTVYTDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKPRNVVED
Ga0308411_1000153121	F018115	AGGAG	MNDAEERFVRRYAHLAEDAPLDCHAARALLRRALADREALAKYLLNDECAPSLLGEFIFRHWNDAICDPVVSSALRLTVKVMEALDRIEDERDRRAAEWWFRLGLVPSTRVLRRLCEGINDAR
Ga0308411_1000153122	F008499	GGA	MKTFRSKSEPRWKRKEREAVKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPQRVLDELLGKERKDE
Ga0308411_1000153123	F004307	AGGA	MFKELISNGSRSERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTLEDVFVFEFEVIDADFGEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPARRTRQRKTKEDEDVPF
Ga0308411_100015313	F005631	GGAG	MRVSVAVDLDNALRKLLPRSARIEAALDAGATAAHGMMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWASVRDAAEAAKKEAVAVLKGR
Ga0308411_100015316	F016404	N/A	MTTEELLTDEARAAVLRALFMIVVNDNEPASARVAAARLFLSQFEEHPNADQNVLVIVDEAAFVKTV
Ga0308411_100015317	F010840	N/A	MNLPFSQPLDKVTFGALAAATVIILAWALREFAGIDLPAEVQSALAVIFGYVVSYHIPLNETEAEAIARKYYKYK
Ga0308411_100015318	F051735	AGGAGG	MFRDVTIINGPVPKNGVADYERVRIKARPLGRPYAWDNGRAWNPYTTNGGFVLVYECEDGTIYVQEIEWEVDPYPDATPDPRTYYYYEKYASLAEARAGWRGWLIEYALGTE
Ga0308411_100015319	F006418	AGGAG	MPKRRSAPAPRPAREIVIDSGDDFKIIFDRETKDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE