Scaffold Ga0308411_10000611

Overview

Basic Information

• Taxon OID: 3300031812
• Scaffold ID: Ga0308411_10000611
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23932
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (88.24%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F004791	Metagenome / Metatranscriptome	423	Y
F005631	Metagenome / Metatranscriptome	394	N
F006252	Metagenome / Metatranscriptome	377	Y
F007976	Metagenome / Metatranscriptome	341	Y
F008499	Metagenome / Metatranscriptome	332	Y
F018115	Metagenome / Metatranscriptome	236	Y
F019420	Metagenome / Metatranscriptome	229	Y
F031016	Metagenome / Metatranscriptome	183	Y
F043176	Metagenome / Metatranscriptome	156	Y
F075805	Metagenome / Metatranscriptome	118	Y
F105262	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308411_1000061115	F031016	AGGAGG	MATIRIWSGSRRVVCGEDYEFVKYEEFEGETLGSVWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWEGEATHAYIHVFPSMGGVNGAAAMFWRELAQAGIIPPLTVGLDE
Ga0308411_1000061116	F075805	AGGAGG	MRVRVWHGWRGVHGNRDVSQFVWIEFDGELLGSLVVEVDEDRTDERAFYRLYDGCLVVAEHRYGDWEKGGVDYGVVSVYGSIEDAARRGWYNDLVRVGAYDAPTLELDEWLSRYEEEE
Ga0308411_100006112	F019420	AGGGGG	MATYRDVIFWSGATDGDCEATVIRARLLGMVIELGDEETRTPDTMTAFYEADGGGIIVYEVECWEADGRMTARWQRVASLEDVRRRYAAYLERLEL
Ga0308411_1000061120	F007976	AGGA	MLSTELARFLDVALDVQAPPYPGIHVADGMLVAASHVMLLVKKFENVVFLRGKGAISPKAAKVLVALVEATYIGSIEVNGNRVTVTAQSTWYDEKVGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSNNPKLKTLKEANAKDYVALVDSPHGGYELFRLRDIEDTHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQWGYTFAVTPFVKHN
Ga0308411_1000061121	F043176	AGGAGG	METYKIWEGERTFLPGDDTSKYKVFEITGEELGWFEDVIEGKTYYVYQTIEGEVVINIVEQNYGIGEPSRAVIYRFSNLEDAAQSEQRYALEELRLI
Ga0308411_1000061127	F005631	GAG	MRLSVSVDVDNALHKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPAGSRYRRTGNLRQKLRIKKLAKTSRIVENTASYARYVYGMPQARVHRGRWAALKDAAEAALKEAIAVLKGR
Ga0308411_100006113	F006252	GAG	MKSFDEQAAFGLPYERVIAQTAALLLYPHRLDLTLVRLDAYAPLDFLIVDGERPVAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFLDGLAVFDVLRTPSTARWLRTRRGAMRKHREYDIKERLVKVEEIHQRQRRSA
Ga0308411_1000061130	F105262	AGGAGG	MLVQETIQPLLRYFNANVTAPADTSVISIANAQAVRIVAHTGTVTGTASLQVHVNDTNNTNNSAQLTDKAITSLASNSSYEIFVTGAEAYAAKTLASHMFVRIAGTGTAQIAIEISAFPGRDIPASLPSNWTRVL
Ga0308411_1000061134	F004791	AGGAGG	MDKPAEIYDIEAIRIDRAALSIRDAASVLNNELTAPVVARLIRKAIGDQADRFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDAIGDEGNE
Ga0308411_100006116	F004307	AGGA	MFKELINHNGNGRERPELNGAYIGRFLGVKERQRPTFETRLSPEPVMEDVFVFEFEVEDAELDAPVRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVAQMTDEQLERAEEYVQTVAVGREYQLTIETKPSGWAEIVHIAPVRKARNWKKEEDEEVPF
Ga0308411_100006117	F008499	N/A	MKKSRSEPRWKRKEREALRALQTIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELLGKERADE
Ga0308411_100006118	F018115	AGGAG	MSDDVERFVRWYAHLPADAQLDRHAARALLRRALADREALAEYLLQHKCAPALLGEFINRHWNDAISDPPASAALRLALRVTQALERIEDERDRRAASWWFQLGLVPSARSLRLICKGINDAR