NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308411_10000388

Scaffold Ga0308411_10000388


Overview

Basic Information
Taxon OID3300031812 Open in IMG/M
Scaffold IDGa0308411_10000388 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28470
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (90.24%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F007976Metagenome / Metatranscriptome341Y
F010840Metagenome / Metatranscriptome298Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F018115Metagenome / Metatranscriptome236Y
F032180Metagenome / Metatranscriptome180Y
F043176Metagenome / Metatranscriptome156Y
F048124Metagenome / Metatranscriptome148Y
F087842Metagenome110Y
F093914Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0308411_100003881F093914N/AKREPVELTLTFLYNEASNSAANTVFDRFQSATPTLAVRWSPRGLVSQARAYATSNDGGTTTGLGVITNVTLSALDPGDPEPYVAMVTVRTPSLRQYTLGNSPTDLS
Ga0308411_1000038810F014738GGAMKLDVLLLVSAFVLAFVHPDAAQVAASAVLVLLVTRIERGRRARKKKSAPVAH
Ga0308411_1000038813F016100AGGAGGMVKSVKVERFKDCEELVRVLSRSETCPATNKDIIRPLNYELFIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQTNAGTWVADALVDFGGVRRLRKGEGDAPLHAVIELITDIQRY
Ga0308411_1000038815F006252AGGAGGVRSFDEQAAFGLPYERVIAQTAALLLYPDRPGITLARLDERAALDYLLFDEGQPVAALEVKRRSIRSDTYPTTIIPQSVVDAARRLTIPTFAAILFVDGLAVFDVLRTPSVARWLRDRRGRLRKHREYDVRERLVKIEAVHQPPR
Ga0308411_1000038818F004307AGGAMFKELIKREGEEERPELNGAYTARFLGVKERQRATFETRLHPEPTYEDVFVFEFEVVDDDLEQPLRVSKWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMTDEQLANAEEFVQSAVGREYQLTIETKPSGWYEIVHIAPVRARLRKTKEDEVPF
Ga0308411_100003882F004791AGGAGGMDKPAEIYDIDAISVDRSALTIRDAASVLNNELTAPVVARLVRKAIGDQADRFPLRAMKAVYERVLPQIFEPDEAVRSRVAGLTPAVGGITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILHEPYAAAALLLKKIFDTVGEEGNG
Ga0308411_1000038820F018115AGGAGMSDEAERFVRWYAHLPPDAPLDRHAARALLRRALADREALAEYLLNNECTPALLGEFIDRHWNDAISDAPSSAALRLASAVMRALGRIEDERDRRAAEWWFRLGLVPSTRVLRQLCEDINNA
Ga0308411_1000038821F005028GAGGMRDDDLRAAMSFFAARLRGVDVTETRLLRWTRHKLRSDAQAVAELMLTVGYRPTYIRYFLRYHVPTLRESAAVGEAYADPSAADAYLGLCWRLDENVLTVYTDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERKPRNVVED
Ga0308411_1000038822F032180AGGAMWWKIEEIPHQELEEWTHAVGRFERAAKRDVAVRAAGAFVIYDLNGTLGYVAGREAPDGAYLVERWVRGKRGWTLYE
Ga0308411_1000038828F048124AGGAGGMATIRIWRGYRDWDADSDYEIVTYEDARELGAVRFEDEEADIQYRIIQWGEGIVVFFVERRGHYCEAEIFEYSDLETAAKDYAFILRRARVI
Ga0308411_1000038831F002982AGGAMKLQFERHPRSICVVLTDAGECDRIISVDRASDAFRAFGIFTRDVAPAAHKPLDALFALPRVVLVEIERREGGWRVEVAYWNGALGTLAQYETDAATLSEALARCVWALAR
Ga0308411_1000038832F087842AGGAGGMITIWGGYVATDEARVYLITFDGERIGGVEDGRNARRTFYQTRDGRAVVHEVRIGRRRGGITYNQALVYVLSDLAQACMHLTVNPQHIAQTRGEATLPPVEAPTLTLEEWACGVGTY
Ga0308411_1000038835F007976AGGAGGMPSIELAKFLGVALDVQATPFVGVHVADGVAAATDGVMLVAKTFSGEFLRGEGAISPKAAKVLEALAEATWIGSIEVDGNRVTVTARSTRYEENVGEVAGEYCEANLPDFYCPRVPIKRMLAVLTDESRGWQQIVENPRLKTVKEASAKDYVAPVDDPRDGEELFRPKADGDTHWYSVAQLRRGLRLFGRNSRLSVRRSNNGWLSFSDQWGYTFAVTPFVKRD
Ga0308411_1000038836F043176AGGAGGMQTYRVWEGTRTWLPGDDTSKFTIIEITGEELGWFEDVIDGKTYYVYQTSEGEVVINIVEQNYGIGEPSRAVIYRFSSLEEAAQSEQRYALEGLRLI
Ga0308411_1000038837F006418AGGAGMPKRRSAPAPRPAREIVIAEGEDYRILYDRDTRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGK
Ga0308411_1000038839F010840AGGAGGVNLPFSQPLDKITYGALAAATVVILAWALREFAGIDLPAEVQSALAVIFGYVVSYYIPLNETEAEAIARKYYKYK
Ga0308411_100003889F007404GGAGGVDIVEIFQLLAAGHNGLTAVDYIWNAVFGAIGAATAYLADNEGEVILPRYDAEQHSVELGALGRVLVGAGAGVLVGYSGYIPFVAGVVAPTLLPILIDKVTAFVGRGRR
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