Scaffold Ga0310125_10056290

Overview

Basic Information

• Taxon OID: 3300031811
• Scaffold ID: Ga0310125_10056290
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 432

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F042376	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_100562901	F042376	N/A	MKKIINKWFRNELKTPEGAMLRYFYAPVISFTLLLAVVCGFYIGFDEVWRYWRVAFLNL
Ga0310125_100562904	F015789	N/A	MIIPVMRDKNMKEKTVKVKGPWVDGVQTVKEISLDEWTSYTPLNRRVKNEWFRVVKW