NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310125_10041934

Scaffold Ga0310125_10041934


Overview

Basic Information
Taxon OID3300031811 Open in IMG/M
Scaffold IDGa0310125_10041934 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2442
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)79.9957Long. (o)-149.9767Alt. (m)Depth (m)432
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0310125_100419341F002078AGGAGMDIAAMFEGQGWFAIAGQIVLIFTAVTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKIRDRAGLPDVLDGM
Ga0310125_100419342F022754N/AMNELIITIMLVIPSPHKLVNWSVNQIPTQIQIIHETGLEVSYSATPVSCSFRPRHAKEMVFRSPNNRCYSVYDLSSPRFVRHPDYWYKVELPKPPLVNLGE

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