Scaffold Ga0310125_10034163

Overview

Basic Information

• Taxon OID: 3300031811
• Scaffold ID: Ga0310125_10034163
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2714
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 432

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_100341635	F009536	N/A	MMSSKDVMKQAFNLMSGKLKEEIKDNLENARSYTRLFVKISQEIDSMKVKLPVFTTLKNDILKINKKTHSKITEEIKYSVPQAQSTLSVKDIERWLETAKKKDQLIYYTGRTLDHPKSVKEESVFRKARNLAMDYDDVPFKNKKYQYRGSIRGEWGCNYKDIITLVQKKVAGLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI
Ga0310125_100341637	F013896	GGTGG	MICDKCNGNGFTLVKGETIQCKKCLSSGELPETLQPPKYPEEDLADIYQTLYTESLKLSETHDPGMVAASLMAIGSRIYKTILTTEDYDKIMERILKTDVEPFKKETLQ
Ga0310125_100341638	F080498	N/A	MIKKIIGYPLLLFFVLLLFACTPRLHVAPNPVEKDNKFMMQLLRNIITQGMDF