NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310125_10034163

Scaffold Ga0310125_10034163


Overview

Basic Information
Taxon OID3300031811 Open in IMG/M
Scaffold IDGa0310125_10034163 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2714
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)79.9957Long. (o)-149.9767Alt. (m)Depth (m)432
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009536Metagenome / Metatranscriptome316Y
F013896Metagenome / Metatranscriptome267Y
F080498Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0310125_100341635F009536N/AMMSSKDVMKQAFNLMSGKLKEEIKDNLENARSYTRLFVKISQEIDSMKVKLPVFTTLKNDILKINKKTHSKITEEIKYSVPQAQSTLSVKDIERWLETAKKKDQLIYYTGRTLDHPKSVKEESVFRKARNLAMDYDDVPFKNKKYQYRGSIRGEWGCNYKDIITLVQKKVAGLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI
Ga0310125_100341637F013896GGTGGMICDKCNGNGFTLVKGETIQCKKCLSSGELPETLQPPKYPEEDLADIYQTLYTESLKLSETHDPGMVAASLMAIGSRIYKTILTTEDYDKIMERILKTDVEPFKKETLQ
Ga0310125_100341638F080498N/AMIKKIIGYPLLLFFVLLLFACTPRLHVAPNPVEKDNKFMMQLLRNIITQGMDF

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