Scaffold Ga0310125_10022905

Overview

Basic Information

• Taxon OID: 3300031811
• Scaffold ID: Ga0310125_10022905
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3331
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 432

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F019911	Metagenome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_100229052	F001930	AGGA	MQSFQQHLKQHLKEGVAWQQSTSKMIFDFGQTGNMKIPLSSKMMTWIFNVQLPRVTVFHVTNGVGLGNLKKLQNKKKSISAFFNMNADYIDQGIKTAGGVVAELDANILMSSKNDILSMPDKAGRRWVELHNIDTDEKMHPEFEKMVIDLAIKHDPRNKEYLKTVPEIGIGVWYKLQTDLLTKFDPAKAGKKMSLVIADYIDGVAAILKKHKNDIQGKVHGYIVRRGTLAVKHPSGRMVGGDSELSEWNAWDEQVVNEIKIEKIHTFNTAKREADWVKDSVIPRLGRIPHKHWKSAEELSTYITQVADAEVRTFGGWARKK
Ga0310125_100229053	F019911	N/A	MKSFKGYLTEAPAWTESLSTMLFDLPRADLADVKIPLSPSIFKRIWPEPVRSRVFHLTDLDGLGKLKGMQGGKRSISAFYNINSSSIGDGIQTYGGYIAEMDADVLAAAPDDIGSQPDKQGRRWLVWSTLVDPKTRNGLGGKSQLSGMYRDISEMMIDIIMEYADDPSETMPNINKSWSHLGLYSSPKEKSLIIKDYMDGMEKIMKKHSKPLKSLFTDYAFDKELMQDPDSGDFALWDEVVVNNFKIKKIHVTEEFGEDWQDDDDIEGFPFELYTDNGDLADYITRTKN