Scaffold Ga0310125_10018976

Overview

Basic Information

• Taxon OID: 3300031811
• Scaffold ID: Ga0310125_10018976
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_Tmax_Bot8
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3665
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 432

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F005685	Metagenome / Metatranscriptome	393	Y
F023622	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310125_100189761	F005685	N/A	KILATLRKSPCDLMALSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN
Ga0310125_100189763	F001493	N/A	MLTFKSFLKEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESIRSKAFHLTDDEGVRKLKKIQGGKKSISAFYNIKDFIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPTTASDPGLGGGSKLKKIEKDLQDLLVEILIKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGEKAMWDELVVNNFKIQKVHVGPEFADDFRDDDDVEGFPFEVYDDVGDMVDYITRTVQKIKL
Ga0310125_100189768	F023622	GAGG	MKTFKEFKGNPPTLITEQVYFKVSIPDMSPMFMKSSSESAVKLDMRMKLKPDVVKEVSIKRVTKSEMRKIYRDMG