Scaffold Ga0316048_102298

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316048_102298

Scaffold Ga0316048_102298

Overview

Basic Information
Taxon OID	3300031809 Open in IMG/M
Scaffold ID	Ga0316048_102298 Open in IMG/M
Source Dataset Name	Metatranscriptome of spruce litter microbial communities from Bohemian Forest, Czech Republic - CLA5 (Metagenome Metatranscriptome) (v2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	859
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.0448	Long. (^o)	13.618	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089214	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316048_1022981	F089214	GGAGG	MVKSPLARILLCLAVLALIGVTALALGTKPNYILTNNGRNAIAAKGPSVVTPRSPNSDAGLKTIAGNLSTYKYGTYFCCFGNTIAQESANFPFTTWVAIGFTPAASVTVNRIEASVGAFSSGDEGTGIELSLREDSNGVPGKIIKNFSIKTPPIYGSCCTLDVGNDSAGIALTGGTQYWIAVTTSSKTTFAGGWAFNSTDMRGGYPIASYCKGPSTYCGTTD

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