Scaffold Ga0318497_10108260

Overview

Basic Information

• Taxon OID: 3300031805
• Scaffold ID: Ga0318497_10108260
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1496
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001960	Metagenome / Metatranscriptome	611	Y
F002957	Metagenome / Metatranscriptome	517	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318497_101082602	F002957	N/A	MSTINDLDPDALISRLAGPLSPPDRAAFRAAAEDALTRVPCWGEGAIYRAVRAFRDPPTDHRASWDIDQEFGPSKLRDAPAIEYGGDLRHIRYRKQHAR
Ga0318497_101082605	F001960	N/A	LAVKQAFYRLADEKRETILIACSKCDWRAAFSRDELIASHGADYAIPNLLNRLAAPDCPRLGSTWDRCGVHCVEPIRHRTT