NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310124_10051426

Scaffold Ga0310124_10051426


Overview

Basic Information
Taxon OID3300031804 Open in IMG/M
Scaffold IDGa0310124_10051426 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2554
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)79.9957Long. (o)-149.9767Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016597Metagenome / Metatranscriptome246N
F023963Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0310124_100514262F016597GAGMALDRDSVPHTWEGTGNHGTYPFASSTGDSSYGLFFTAREMELFNDYNTELLGIIAQTGVTYYRIEPDSSDPNSIYGESEVKVTRDPVQVHCWVMLDEPETETNSFTVDIRRRIELYMHKDRLTELDLVPRMGDFVGYDNQYFEILRAGVPNFVFSYPQTKLGVILRCLSVREGVFDPNRDFVNKEYVGDAENPY
Ga0310124_100514263F023963GGAGMATPSNVHQKSIEFDEVNLFSIDRAVYDWFNTKHATNIQGRRVPVMFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNVDRFVFQQADGSPRVQISRRVAMSNFDANERVPFDGPHMYSSSRRRSDAPVMEVTTIPWPDFVTIPYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVEGYILKKTDASVTRTASKMLMSEGYMEAPRMDAPGHKSIDEILTHERAKAPHQYPEPMPPGLGKVNYGSLNNSDFGLDKYNQPQQARVGGGKVDYSNLAESDYGLNKYTGM
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