Scaffold Ga0310124_10027238

Overview

Basic Information

• Taxon OID: 3300031804
• Scaffold ID: Ga0310124_10027238
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB11b_AW_Bot5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3561
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 79.9957
  • Long. (^o): -149.9767
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F078613	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310124_100272382	F010829	AGGAG	MGNLADHRRLRKAKGLYKEDPGDGTYTKDELDYIPFLGNNPSDEKPAVYTARFHITDGTIELEAKRSGGKLYITCLADEKHNRAIFECVERFVAAIFDGTAREIREAQPEDGELMKLKKQIDQLEKENMGHVETLERLQDIMK
Ga0310124_100272383	F078613	N/A	MEYSDWIESPKSARVWLEDSMTTLCQFAYVTPLHKVMHWDDINKRRTLCYQGKYEKCTTCDRGINQIHDYTYGIYTSSGDKSIRYLSTALSSHTNFQVLFRDYLKANTNPCDLLFQIRKGDIVTPKGYETKGYEIEMLEDKEPFIAEADRPSPFQEGKWVIPRMVAEALLDIDGHPMNLLDLYTEMKERFPNIEDRDIKEYAILLGEGGVVDLRNAKEKEWAI