NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310120_10127776

Scaffold Ga0310120_10127776


Overview

Basic Information
Taxon OID3300031803 Open in IMG/M
Scaffold IDGa0310120_10127776 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1435
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014805Metagenome / Metatranscriptome260Y
F021015Metagenome / Metatranscriptome221N

Sequences

Protein IDFamilyRBSSequence
Ga0310120_101277761F014805AGGAGMGLYKSITTDAGSTLDYWDYGIVEVNTSAPTADQQNANVNIWGYTDVAYYNAGAPPVERWNTYSCGMVSGTDHYPYADLTGVSGVVTGTQRLGPPLPANWSWTENSVSGWMAESSDIRNGAQTWALVCVPAFSGATVTGQVYPD
Ga0310120_101277762F021015N/AMGLNLNYTKPDGQQAFYWKVSRVEDWFQGTEGTDPGYNANVNSLGFSDEAYRNAGAPSVDGNMFNCPYSGAADMYSYQDLTGVSGEVTGSERLGPPLPAGWDWAENGVSGWMQRNDDIRIGAYTWIKNCVPFFSGATDALTAGE

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