Scaffold Ga0310120_10111263

Overview

Basic Information

• Taxon OID: 3300031803
• Scaffold ID: Ga0310120_10111263
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1558
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F004794	Metagenome / Metatranscriptome	423	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310120_101112631	F004794	GGAG	MSGSWDIATATSLGTGVAKTTINGGNNLTKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGAFINIVVPLLEAYECNTGLQEGATSQFIISGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPD
Ga0310120_101112632	F003270	N/A	MARKRGRKRKARKNGSKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNNGGMVSTANVTPNVLVQNRSQTDRAYGVARSNRSFVPVDSFDYSTGSAFR
Ga0310120_101112634	F093971	N/A	KDESEIFMDTLKNLLADPHQDEAWNDRFKQTVRKYFDI