NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310120_10111263

Scaffold Ga0310120_10111263


Overview

Basic Information
Taxon OID3300031803 Open in IMG/M
Scaffold IDGa0310120_10111263 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1558
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)73.0038Long. (o)-140.0007Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F004794Metagenome / Metatranscriptome423Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310120_101112631F004794GGAGMSGSWDIATATSLGTGVAKTTINGGNNLTKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGAFINIVVPLLEAYECNTGLQEGATSQFIISGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPD
Ga0310120_101112632F003270N/AMARKRGRKRKARKNGSKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNNGGMVSTANVTPNVLVQNRSQTDRAYGVARSNRSFVPVDSFDYSTGSAFR
Ga0310120_101112634F093971N/AKDESEIFMDTLKNLLADPHQDEAWNDRFKQTVRKYFDI

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