Scaffold Ga0310120_10073955

Overview

Basic Information

• Taxon OID: 3300031803
• Scaffold ID: Ga0310120_10073955
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1977
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038419	Metagenome / Metatranscriptome	166	Y
F049705	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310120_100739551	F038419	N/A	ITTTTIMLVQAIIVTWIMVTAPTPCPQEYLDMGGDTIKYCELIPVGLGSQWSLKE
Ga0310120_100739552	F049705	AGGA	MIVILLLTSCSYDTKVVCDYRWHHKMTMKKLMQRCNYIPYGDAWVIKQGEEYGK