Scaffold Ga0310120_10041235

Overview

Basic Information

• Taxon OID: 3300031803
• Scaffold ID: Ga0310120_10041235
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2748
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004881	Metagenome / Metatranscriptome	420	Y
F008085	Metagenome / Metatranscriptome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310120_100412352	F004881	GAG	MSYNFFETQGKPYQECSNPNDPEDKSLCVIVQDGSSFDGAIVRYTTFKLVEQELTGDDIACQYEYEIEVPPHAIKHKITDKEGKEFEKKLGEWVIEILQKQMDKHAAADRDTNT
Ga0310120_100412355	F008085	GGAGG	MAGSIMVRYAQKTYKQRTAEYNNSAVFKNLTHSVDIIPESMSIMTFSTQKEANKFAESMIDKGYHIIEIKDDYKKV