Scaffold Ga0310120_10004873

Overview

Basic Information

• Taxon OID: 3300031803
• Scaffold ID: Ga0310120_10004873
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9311
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 73.0038
  • Long. (^o): -140.0007
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F017844	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310120_1000487310	F001625	N/A	MALTISTKDWTNANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATGGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSAGSAMTELVNTSSATNSKVFEFLVIGY
Ga0310120_1000487311	F017844	N/A	IPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL