Basic Information | |
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Taxon OID | 3300031803 Open in IMG/M |
Scaffold ID | Ga0310120_10004873 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB27_AW_983 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9311 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 73.0038 | Long. (o) | -140.0007 | Alt. (m) | Depth (m) | 800 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001625 | Metagenome / Metatranscriptome | 661 | Y |
F017844 | Metagenome / Metatranscriptome | 238 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310120_1000487310 | F001625 | N/A | MALTISTKDWTNANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATGGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSAGSAMTELVNTSSATNSKVFEFLVIGY |
Ga0310120_1000487311 | F017844 | N/A | IPSKDAPSDSGDASEIGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL |
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