Scaffold Ga0310123_10614832

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10614832
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 670
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F041259	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_106148321	F041259	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKGVVRDFLSDPINKKAGWRSKDARFFRLGFQKVAKENNFNVMQIGVTPTPSRSKTQKGTMNMNVKTKL
Ga0310123_106148322	F009404	AGGAG	MSDEPETIQPKGESLVKHCPICGVEFDETVLTNRWLKCDSCETIFQIKVKTGE
Ga0310123_106148323	F005148	N/A	LSKCFCFLESKMKQKKYEEYLKRTLPESEEVECKNCERKFYDEFNLICLSALDMCLLCANRNLDKETIKEKYHE