Scaffold Ga0310123_10175653

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10175653
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F041753	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_101756532	F010027	AGGAG	MTTANSSYEFEITSQEVLTGSHPKSGLLTAIVSGVCTNADGASFDFIATNNLDMRYPDRFKVNWNGNKARMPEVVGFGIADDVRSGRKVAEELYFTRGARIAIARKCKALFPESKLTPAS
Ga0310123_101756534	F041753	GGAG	MINYQVHFEKTTSKGVKRGVRTVRARNELEAKLKVASVVADSFGFWINRLASEEAI
Ga0310123_101756535	F012400	AGGAGG	MKYSIKKFNGDDIYSWAVFRAQDVKGMRSPIFFGQAQPVMSGMDRNEARYQKTCLEKK