Scaffold Ga0310123_10161246

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10161246
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1530
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F013896	Metagenome / Metatranscriptome	267	Y
F045144	Metagenome / Metatranscriptome	153	Y
F080498	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_101612461	F045144	GGA	LTWHKGLYSHLNRTGKTIRKYPDGNDPLKQKLFGKTRQCTKCGKRKSTLRFHWKTDYTNSNKVTKRLQRFCGVCRVKHDNEKYSATAEAYLKRRIGTLKSSCYRYTGRRKVILTSDQFYNVWKKQRAKTGLQCPLSGETMTHALGRGQVLTNISVDRIDSDKDYIKINIHFLFLISNLIKKK
Ga0310123_101612462	F080498	N/A	MIKKIIVYHLLLFFVLLLFACTPRLHVAPNPVEKDNQFMTQLLRNIITQGMDF
Ga0310123_101612463	F013896	GGTGG	MICDKCNGNGFTIVKGKTIQCKKCLSSGELPGTSTPPKYMDDDLAHVYQTLYEESLKLSGDNDPGMVAASLMAIGSRIYKTILTPEDYDKMMEKILNTDVEPFKKETLQ
Ga0310123_101612464	F000567	N/A	MKEKLLKITQKITMWHEGMFKYLTLKSKTSVFFTWLLVLICLYEIFEHIFIPLALIWWGF