Scaffold Ga0310123_10148561

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10148561
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1605
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051977	Metagenome / Metatranscriptome	143	Y
F077398	Metagenome / Metatranscriptome	117	N
F097505	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_101485611	F077398	N/A	PEITKAVVKVKEGKVEVYTKAYNDTIKRAGNVYSADYSLIDETIVDIKKMSRKVSTNDYAANNVYLILQDALKKITLAEK
Ga0310123_101485612	F001235	GAG	VATKLNVDPGSDIGKKLWDRHQANEYTHVNNYKEAICINCFTKDATSATIADICGECAGKRGREPLLATITQKMYGLCFFCGKYQFNIEQINARFCRGCHRKIANVTKEYNKRGGPLGMDPFWIAMRKKHGKDWKVIMKENLGNKR
Ga0310123_101485613	F097505	GAG	MDWKRAKKRMHCDCSIHDIVSSVLEYLIITPMFATAYLAVTVPWMLFVIKLDGEQFMDFVWQSVLVDLIVAYPVTKLILKLKPRIEKITSLRH
Ga0310123_101485615	F051977	N/A	MGTAIYVYDTEEEYLKIYHRMDKEVMFSAPILDIFLKPDKKLWVVSKVSKNKERPQLGRSIVHFVNGTVFEYSDGDERPIRHNSITYNPKKNKVEFFPKKLRSAELEIRVDRFYGEKPKKRSYLDQTMRFYDVSRDRMNFILQHEKSV