Scaffold Ga0310123_10073185

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10073185
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2400
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F054107	Metagenome / Metatranscriptome	140	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_100731852	F054107	GAG	MKKEKPEPKVNAAAGNFVNAVQKGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNAPPEVQGSEAERDQYMKKGELIQIIKDGIQLLRQQTQGVDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVS
Ga0310123_100731853	F081448	AGG	VKALDVLTDIIKNKNLAKEYALQESKDLRVLSPKKDTALACLLSGIESVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLQPHLLKLKGSHTTMEETLKEWRI
Ga0310123_100731854	F040140	N/A	MPKFGKKFEDTGYDGSQHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHFVWSKKQLEPGLKCELC