NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10072830

Scaffold Ga0310123_10072830


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10072830 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2406
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y
F002744Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_100728302F001922N/AMIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVMEYMQYDRMLKEKQQKPNVTTGAVFAMIGLGLSLITFPQIVQKIQEMRVING
Ga0310123_100728303F000730GAGLVNEFIPPEIIPLVWFSCISVTIYVFFRVFSSTLKEKFRQTNLTRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKEQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI
Ga0310123_100728304F000704AGGTGGMPHASSEIQPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAAITRDVEDSNQPMDDFPAVYSDTDAGLLLNEGNDTAFSQVYSFVPDMTAIIYAIHVVFPAIVTCSSFTNGSLNVGALHIKITERSTNNRLLYENTFQSNAANLTGTGTSLHFFQRDIVETIKIEKGNPIDILVELVTVITGTNTRQEGYTTLAPYLKTAVLKRFTPAGMALHLHADLSHADGVFKYKKDRVSMLGQ
Ga0310123_100728305F002744N/ATRPTNETAAATAANTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTYTGLGSAAGASTGGDGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
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