Scaffold Ga0310123_10071685

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10071685
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2427
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F015879	Metagenome	251	Y
F054929	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_100716851	F001594	N/A	MEKTKLTKNEYLDSLDPDNLNLEKKDLINFCHGCVDEWKNNKMGNFKFIVAMELIIAGVRITPEDVLKAVWKKILVWFWDLQFKNALAEKEGMLKKLRELGSG
Ga0310123_100716854	F005148	GGAG	MKQEKYKEYLKRTLPESEEVECKKCGLTFYDEFNLICLSALDMCLLCANRNLDKETIEEKYNVNK
Ga0310123_100716856	F015879	GGAG	MKKDDVIIMTCDVCGTMSHAIKTKISKGYYIKDEFILCKICFGDLK
Ga0310123_100716857	F054929	N/A	QNPQSPYDESNKRLQCVDCGSLFCWYSEQEFDSQMQEFQRHLVSKHDRAKTEIERDVLFSLKYEGDSR