Scaffold Ga0310123_10060923

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10060923
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2651
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F066859	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_100609231	F033842	N/A	KAKLGMKGAAGYAAATVALEAGTQILERFVLDPHLPQVANIMNTVITNNAPGLGTVDVRDAIVLLPAETQAYAMLSKSNKQTHFINALASYVTKIVLRRTGLNPKEIADKTEKLITPRMMLPSVM
Ga0310123_100609233	F066859	GAGG	MVHELPDNNGRVQTRINTSRAGYYVSNFDVAESVTLTPQGGGTIDIVLPPGAKVSIPDKIGMVAQGGNSSRNYVFLMWTAGYAN