NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310123_10059802

Scaffold Ga0310123_10059802


Overview

Basic Information
Taxon OID3300031802 Open in IMG/M
Scaffold IDGa0310123_10059802 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2678
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.6947Long. (o)-146.6612Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041246Metagenome160Y
F062829Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0310123_100598021F041246GAGGMKYVFGVIKRFNYTKSENHTKQGTKHFFCYEFDVESGKFKRVRISTIKAIYYKITFIFGLKSKKVTNVYCKDCKKKYDCIVNFW
Ga0310123_100598022F062829N/AMRCLSHNFVFKTEKCMKGSYKFMKKTRICYFCVRKLKHDYGLTESDLLKNNSYKNFLKSGSLSPEYLPLSTGISE

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