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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031802 Open in IMG/M |
| Scaffold ID | Ga0310123_10033039 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3677 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 74.6947 | Long. (o) | -146.6612 | Alt. (m) | Depth (m) | 800 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002150 | Metagenome | 589 | Y |
| F003270 | Metagenome | 496 | Y |
| F008596 | Metagenome | 331 | N |
| F008691 | Metagenome / Metatranscriptome | 329 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310123_100330392 | F002150 | N/A | MVGVTVPGVIASKTVKKSGQVLQEQFGYNFIDLVTKLAIFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQKTYSATPTAPGQFNPPGWDKPYDYGTEQHQQAEPHLFPEKEKQFKFWDLINAIAIFYISWEAYKYWERGGKDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK |
| Ga0310123_100330395 | F008596 | GGAG | MSGSWDIAKATSLLTGVAKVQINNGNNLTKPTQAVNLVEVVPYTVSSGAYTASQSIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFVNIVVPLLEAYECNTGLQEGATSQFIVSGQCQTAQTVAPLMGMSLHYSTTPPNRPEHFYHKPDDESTFTTATSNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTTTSGNLQLASYHNTHMPMKTSCKISTTFTNDITQSAATNFILGVGYTKQG |
| Ga0310123_100330396 | F003270 | N/A | MARKRSRRRKAKKSSSKSIKSMIRQVVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGLAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNIMVQNRAQTNRSFATAQSNRSYVPLDSFDSSTGSAFR |
| Ga0310123_100330397 | F008691 | N/A | MPLGYDVKEEATEVKKNLFENRDNFIMLVVAGVVGGIVTRFVVPKSVTEGTIFDRLKSWFGYDQEEEEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |