Scaffold Ga0310123_10022617

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10022617
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4469
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001922	Metagenome	617	Y
F003617	Metagenome / Metatranscriptome	477	Y
F014859	Metagenome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1002261710	F001922	AGG	MVLQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFVATISGGIWLNSLGSFFNLKFPSTLPEWLTQLFTTGYKGFTFWNLVTTIAVLIVVVEAMQYDKMLKEKGQKPNVTSLAVFGVIALGLSLITFPTIIQKLKERRILNA
Ga0310123_1002261711	F014859	N/A	MEFSNTKKIGCQCLVNELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKARITHTTRKNKTVDVEETGNQIDNLINNAPRILDEVNKEIAAQREQGVTDQQMKGLLQKKQLLELGTSIPPEVYNIVAKPVIKKLIGFIGKI
Ga0310123_1002261712	F003617	N/A	CSAYTNGGLNIGGLHIKITERSTNARLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDILIELETVVTGVNTRQEGYTPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSMLGQ