Scaffold Ga0310123_10022428

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10022428
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4487
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F011704	Metagenome / Metatranscriptome	288	Y
F022429	Metagenome / Metatranscriptome	214	Y
F033079	Metagenome	178	Y
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1002242815	F011704	N/A	ELIDLTDYLAVSNEYLIRKFKDGGSYLIIDTYGDFLILERDEVETVTNIIWNDLYGPISEKIPHILN
Ga0310123_100224282	F033079	N/A	MTEEIAGNRLVWRHIQRENQRMMLDPLGYDAIKDIDEIHSRNRRMTDDPYIKATSAKIAHHFPKIDDSERR
Ga0310123_100224284	F039182	N/A	MKWMIIIVLASALSLNGCANTADAEDSTATTPAEQQEADKRSENASSDTTWIAIVMTWNPVNRVIDKEFSTEVACWDYYENGVGESKFGSQVLDHQNNPPTKDFNFGPNHLEYPIRTYRGINDAQGQVWLTCDIKGRYSGL
Ga0310123_100224286	F005464	GGA	MGLNVIRVGGWILSLLCILIGLYFVWPHIHVALLGIVFLYLGVRVFNFSTFKEYAEGRKQLLTKLQGW
Ga0310123_100224287	F022429	AGG	MSSITSFSEIWNGPTFLNRGTSARRMTARDEVGKKKRDKSGKLKAGEHFAKDWDKDLWD