Scaffold Ga0310123_10022290

Overview

Basic Information

• Taxon OID: 3300031802
• Scaffold ID: Ga0310123_10022290
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4502
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.6947
  • Long. (^o): -146.6612
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F005685	Metagenome / Metatranscriptome	393	Y
F023622	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310123_1002229010	F023622	GAGG	MKTFKEFKEKSPTLTLIAEQVYFKVSIPDLSPMFMKASSESAVKLDMRMKLKPDVVKEVSIKRVTKSEMRKIYRDMGQGKEVEPDEKEKESAEEK
Ga0310123_100222902	F000245	AGGA	MKTFKEYSLDRKLDKYVIDAIKKKKLAKHPVNATDDYKMKKGKPAFKIPSPTGEMVIHVWLRKMAPPATKDMMAFNYQLEDK
Ga0310123_100222903	F005685	GAGG	MKKFNEYSSFEDKILATLKRGPSDLMSLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKKKKN
Ga0310123_100222905	F001493	AGGA	MLTFKSFLKERAPAWTESLSTMLFDLPREGLADLKIPLSPAIFKRIWSESIRSKVFHLTDYAGLEKLKKMQGGKKSISAFYNMEDHIIQSGIKSEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSSLMNPTTASDPGLGGGSKLKKIEKDLQDLLVEILIKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSIFTDYTKKRTLDPDEDSGEKAMWDELVVNNFKIQKVHVGPEFADDFRDDDDVEGFPFEVYDDAGDMVDYITRTVQKIKL